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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3692538_3695532_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3692538 - 3695532
Intron Length:
2995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTGTGATGAACT
Flanking Amino Acid:
VYFGFQCHSRVLHSTARYCK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
82.3
0.73
0.7
76.6
25.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
48.1
-0
2.2
69.86
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007549
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007826
3688325 - 3695802
7478