Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3714467_3719067_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3714467 - 3719067

Intron Length:

4601

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

AAAAATATAACC

Flanking Amino Acid:

LAAGQEAPGRGAQPSISNAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

69.1

0.48

32.1

Major PPT

75.1

0.57

0.9

68.8

37.1

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

46.2

-0.3

1.7

54.23

36.4

Associated Gene:

Gene:

VWA1

Ensembl Gene ID:

ENSAPLG00000007608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033011

3714394 - 3724923

10530

ENSAPLT00000007889

3714394 - 3725445

11052