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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_37294_37950_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37294 - 37950
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGGCCCTAACT
Flanking Amino Acid:
LMGKISPVTFSVASTVKHAL
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
79.8
0.67
0.9
70.3
40.3
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
67
0.61
1.8
84.63
42

Associated Gene:

Gene:
SLC35E2B
Ensembl Gene ID:
ENSAPLG00000011973
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012468
37047 - 45205
8159