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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3732333_3733444_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3732333 - 3733444
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
CCTTTTTTAAAA
Flanking Amino Acid:
SVQKQEAMRRATVEREMELR
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
71.7
0.49
1.1
74.7
32.6
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
63.7
0.43
1.4
67.32
39.7

Associated Gene:

Gene:
ATAD3A
Ensembl Gene ID:
ENSAPLG00000007627
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007948
3729761 - 3754402
24642