About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3739970_3742351_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3739970 - 3742351
Intron Length:
2382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
GAGTGCTTAACC
Flanking Amino Acid:
PGTGKTLFAKKLAVHSGMDY
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
83
0.74
0.8
73.9
36.8
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
63.3
0.4
1.8
68.41
42.8

Associated Gene:

Gene:
ATAD3A
Ensembl Gene ID:
ENSAPLG00000007627
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007948
3729761 - 3754402
24642