About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3742477_3743900_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3742477 - 3743900
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAC
U12 Branch Point Sequence:
TCTCCTATTACT
Flanking Amino Acid:
LFDWANTSRRGLLLFVDEAD
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
62.5
0.31
1.1
55.4
40
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
51.5
0.13
1.9
74.56
42

Associated Gene:

Gene:
ATAD3A
Ensembl Gene ID:
ENSAPLG00000007627
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007948
3729761 - 3754402
24642