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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3743953_3744752_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3743953 - 3744752
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TATCTTTGAATT
Flanking Amino Acid:
ADAFLRKRATEKISEDLRAT
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
60.5
0.41
1.4
75.08
35.5

Associated Gene:

Gene:
ATAD3A
Ensembl Gene ID:
ENSAPLG00000007627
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007948
3729761 - 3754402
24642