About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3747022_3747714_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3747022 - 3747714
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTGTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGTAAAGTAATT
Flanking Amino Acid:
HVLKPATEGKQRLKLAQFDY
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
44.3
-0.3
2.3
67.96
42.5

Associated Gene:

Gene:
ATAD3A
Ensembl Gene ID:
ENSAPLG00000007627
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007948
3729761 - 3754402
24642