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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3747824_3754222_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3747824 - 3754222
Intron Length:
6399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
GCTGCCTCACCT
Flanking Amino Acid:
EISQLAVAWQAAAYASEDGV
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
49.6
0.05
2
68.65
47.8

Associated Gene:

Gene:
ATAD3A
Ensembl Gene ID:
ENSAPLG00000007627
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007948
3729761 - 3754402
24642