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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3763642_3764825_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3763642 - 3764825
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AATATCTCATCT
Flanking Amino Acid:
VRAWRTSRRYDNSWSWIPKF
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.3
0.73
0.8
73.3
37.2
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
49.2
0.02
1.8
68.66
41.8

Associated Gene:

Gene:
TMEM240
Ensembl Gene ID:
ENSAPLG00000008351
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008667
3763493 - 3770797
7305