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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3765035_3770392_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3765035 - 3770392
Intron Length:
5358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCCCTGCAACA
Flanking Amino Acid:
EDRVCHCNCGRHHVHYVIPY
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
79
0.72
1
69
38.9
Major PPT
70.1
0.45
0.9
65.4
34.9
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
47.6
-0.1
2.2
64.68
42

Associated Gene:

Gene:
TMEM240
Ensembl Gene ID:
ENSAPLG00000008351
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008667
3763493 - 3770797
7305