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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3777168_3778210_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3777168 - 3778210
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAG
U12 Branch Point Sequence:
AGTTACTTAGTG
Flanking Amino Acid:
AFLICELCQCIQHTEDMENE
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
59.7
0.24
1.5
57.6
41.3
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
52.8
-0
1.8
59.92
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008354
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008704
3777066 - 3800069
23004