About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3778330_3780025_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3778330 - 3780025
Intron Length:
1696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTGTTTCCAACT
Flanking Amino Acid:
EERVYDQVVEDLNSREQETC
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
66.7
0.38
1
60.9
40.5
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
53.1
0.17
1.9
76.27
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008354
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008704
3777066 - 3800069
23004