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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3793463_3799989_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3793463 - 3799989
Intron Length:
6527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCGGG
5'SS Class:
major
3'SS Sequence:
CACTGTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CCTTCCCCACTG
Flanking Amino Acid:
NRSMEAHNILSKRGFSVRSF
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
58
47.1
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
76.8
0.6
0.9
72.8
37.1
Minor 5ss
41.3
-1
3.3
55.9
48.3
Minor BPS
42.5
-0.7
2.1
47.68
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008354
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008704
3777066 - 3800069
23004