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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_38097_38750_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38097 - 38750
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTGCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TATAAATGAAAT
Flanking Amino Acid:
MLIPAWIFFMDVPVIGKSGR
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
69.6
37.4
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79.6
0.67
0.9
78.6
35
Minor 5ss
39.8
-1.1
2.8
47.3
43.3
Minor BPS
45.8
-0.2
2
67.49
41.7

Associated Gene:

Gene:
SLC35E2B
Ensembl Gene ID:
ENSAPLG00000011973
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012468
37047 - 45205
8159