Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3818078_3820368_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3818078 - 3820368

Intron Length:

2291

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTGAT

5'SS Class:

major

3'SS Sequence:

GCTGTTGCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGTCAG

U12 Branch Point Sequence:

TTGTTTTGTGCT

Flanking Amino Acid:

STGSKQVQMQSWKDIVNKVN

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

1.2

73.5

37.5

Major BPS

44.2

-0.3

1.7

49.1

46.3

Major PPT

72.3

0.5

65.3

41.1

Minor 5ss

29.3

-2.4

3.3

40.4

45.9

Minor BPS

-0.8

3.5

67.76

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008453

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008788

3813530 - 3839724

26195