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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3820527_3821223_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3820527 - 3821223
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
GTCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
GTATCCTGAGCA
Flanking Amino Acid:
TVNSLPNGNPDVKMVMRIHV
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
76.5
0.6
0.8
69.7
31.1
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
59.9
0.31
1.7
70.69
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008453
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008788
3813530 - 3839724
26195