About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3821503_3821627_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3821503 - 3821627
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GTTCCTCTGATG
Flanking Amino Acid:
SSQLQLMRQKAFPVNLENRP
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.4
37.9
Major BPS
79
0.72
1
69
38.9
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
36.7
-1.5
3.2
45.4
49.7
Minor BPS
48.8
-0.2
1.7
57.43
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008453
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008788
3813530 - 3839724
26195