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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3821793_3824415_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3821793 - 3824415
Intron Length:
2623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCAC
5'SS Class:
major
3'SS Sequence:
TTTGTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTTCTGTACCT
Flanking Amino Acid:
EVHSQLLNAQTQMEEFRQLK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
65.1
41
Major BPS
78.3
0.7
1
80
32.1
Major PPT
83.3
0.75
0.8
81.6
30.5
Minor 5ss
38.2
-1.3
3.1
50.6
45.9
Minor BPS
60.1
0.4
2.3
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008453
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008788
3813530 - 3839724
26195