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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3828100_3832088_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3828100 - 3832088
Intron Length:
3989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CCCTCCCTAATT
Flanking Amino Acid:
ALSSQHKILKNQHEDVKKQL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.4
0.82
0.9
85.4
34.3
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
60.2
0.4
1.8
71.93
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008453
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008788
3813530 - 3839724
26195