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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3832833_3833266_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3832833 - 3833266
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGTCATTTAATT
Flanking Amino Acid:
ERGEHKKTKEDFLVYKLEAQ
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.2
0.61
0.8
69
37
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
59.4
0.37
1.5
72.21
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008453
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008788
3813530 - 3839724
26195