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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3833342_3839537_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3833342 - 3839537
Intron Length:
6196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTTATCTCACGC
Flanking Amino Acid:
QQEALSAQLQVVYEHRSRLE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
77.2
0.61
0.8
69.1
37
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
46.2
-0.3
2.1
62.66
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008453
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008788
3813530 - 3839724
26195