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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3865152_3872619_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3865152 - 3872619
Intron Length:
7468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAATT
Flanking Amino Acid:
FERYETAHSQPVVVSPRQNL
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.3
63.7
42.9
Major BPS
80
0.75
1
78.6
31
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
33.9
-1.8
3.2
44.7
43.5
Minor BPS
47.7
-0
2
68.54
41.9

Associated Gene:

Gene:
MIB2
Ensembl Gene ID:
ENSAPLG00000010686
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011186
3863623 - 3889389
25767