About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3876514_3877686_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3876514 - 3877686
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CATCCCCCAAAA
Flanking Amino Acid:
WTFHPGALTKLNTFWVGDVV
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
45.6
-0.3
1.9
57.06
41.2

Associated Gene:

Gene:
MIB2
Ensembl Gene ID:
ENSAPLG00000010686
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011186
3863623 - 3889389
25767