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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3878651_3879610_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3878651 - 3879610
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
CATTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTCATTC
Flanking Amino Acid:
MTTENAKESKSTLITVLEKL
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
61.4
39.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.5
0.6
0.8
66.6
35.3
Minor 5ss
27.6
-2.6
3
30.6
36.4
Minor BPS
53.3
0.08
1.8
66.91
39

Associated Gene:

Gene:
MIB2
Ensembl Gene ID:
ENSAPLG00000010686
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011186
3863623 - 3889389
25767