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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_38824_39214_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38824 - 39214
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
KLLSGDKYRFSAPELQFYTS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.7
0.87
0.6
84.5
23.4
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
SLC35E2B
Ensembl Gene ID:
ENSAPLG00000011973
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012468
37047 - 45205
8159