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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3882920_3883750_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3882920 - 3883750
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCCAATGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTACCTCCAAT
Flanking Amino Acid:
LHYSALKGNKLAIKKILARA
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
66.7
0.38
1
57.5
42.9
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
50.9
0.11
2.2
78.71
42.9

Associated Gene:

Gene:
MIB2
Ensembl Gene ID:
ENSAPLG00000010686
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011186
3863623 - 3889389
25767