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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3884404_3886354_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3884404 - 3886354
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CAACATCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCTATTAACA
Flanking Amino Acid:
GEMGLSLLSTLQASGFLGNV
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
66.5
0.37
0.9
62.5
38.9
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
70.7
0.65
1.5
82.01
32.1

Associated Gene:

Gene:
MIB2
Ensembl Gene ID:
ENSAPLG00000010686
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011186
3863623 - 3889389
25767