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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3887656_3888417_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3887656 - 3888417
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATCATTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGATTGTAATC
Flanking Amino Acid:
FPCQHSIVCEECSRRMKKCI
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
68.5
0.42
1
65.7
40.2
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
48.5
-0.1
2
61.67
38.8

Associated Gene:

Gene:
MIB2
Ensembl Gene ID:
ENSAPLG00000010686
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011186
3863623 - 3889389
25767