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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3906181_3906820_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3906181 - 3906820
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAG
U12 Branch Point Sequence:
CTTTGCTTAGTC
Flanking Amino Acid:
AVGLLFLYMEAGLGAYCFLI
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
52.3
0.06
1.6
51.4
46
Major PPT
80.6
0.69
0.8
73.8
36.9
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
56
0.17
2
69.78
42.4

Associated Gene:

Gene:
SLC2A5
Ensembl Gene ID:
ENSAPLG00000010001
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010460
3905947 - 3913365
7419