About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3909379_3909646_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3909379 - 3909646

Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACAGCAC

5'SS Class:
major

3'SS Sequence:
CTCTCCCAACTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AACTCAC

U12 Branch Point Sequence:
GGGTCCGTAACT

Flanking Amino Acid:
QKGNEEQARQALQRLRGWDD

Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.2
0.45
1.1
57.5
41.7

Major BPS
68.4
0.46
0.9
69.3
26.9

Major PPT
62.3
0.28
0.9
56.1
33.9

Minor 5ss
29.3
-2.4
3.5
41
45.6

Minor BPS
61.6
0.44
2.1
77.59
44.4

Associated Gene:

Gene:
SLC2A5

Ensembl Gene ID:

Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3905947 - 3913365
7419