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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3925744_3930597_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
3925744 - 3930597
Intron Length:
4854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTCTTTA
5'SS Class:
weak_minor
3'SS Sequence:
CCTGAGTGTGTAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
ATGTCCTGAGTG
Flanking Amino Acid:
WIHLCLCPLICLFVHIFVFP
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.3
61.5
39.4
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
60.1
0.23
1
53.4
41.2
Minor 5ss
56.8
0.23
2
64.7
41.7
Minor BPS
52
-0
1.8
58.78
43.2

Associated Gene:

Gene:
GPR157
Ensembl Gene ID:
ENSAPLG00000009941
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010354
3924820 - 3935266
10447