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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_39269_40055_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39269 - 40055
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTACAGGTAAAT
Flanking Amino Acid:
SAALSTNIMDCLQNVFSKKL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
37.3
-0.8
2.5
56.5
45.2

Associated Gene:

Gene:
SLC35E2B
Ensembl Gene ID:
ENSAPLG00000011973
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012468
37047 - 45205
8159