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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3980078_3981233_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3980078 - 3981233
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
YRVDHYLGKQAVAHILPFRD
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
H6PD
Ensembl Gene ID:
ENSAPLG00000009884
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032958
3976511 - 3984835
8325
ENSAPLT00000010283
3977567 - 3984835
7269