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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_40177_41064_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40177 - 41064
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
MSRMILGEYTGLLVNLSLIP
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81.2
0.7
0.9
78
40.1
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
SLC35E2B
Ensembl Gene ID:
ENSAPLG00000011973
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012468
37047 - 45205
8159