About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4029073_4033322_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4029073 - 4033322
Intron Length:
4250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GGGATGTTAACG
Flanking Amino Acid:
IRMRYLNGLDPEPLPLMDLC
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.3
74.4
37.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88
0.86
0.7
80.3
31.7
Minor 5ss
35.7
-1.6
2.9
46.9
41.8
Minor BPS
46.2
-0.4
2.1
49.14
44.3

Associated Gene:

Gene:
SPSB1
Ensembl Gene ID:
ENSAPLG00000004425
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004536
4028379 - 4033450
5072