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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4116272_4116767_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4116272 - 4116767
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTGG
5'SS Class:
major
3'SS Sequence:
TGGTTCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTCCTG
Flanking Amino Acid:
NCEQYNGFQENGDYNKPIPA
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
54.3
45.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79.1
0.66
0.9
77
37.2
Minor 5ss
35.1
-1.7
3.4
47.5
47.9
Minor BPS
45.4
-0.4
3.6
70.75
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009474
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009883
4110266 - 4134056
23791