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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4117968_4118545_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4117968 - 4118545
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGCTTCTGACAA
Flanking Amino Acid:
RRETDKTYAQNLCSSSSTSI
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.6
42.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
37.4
-1.4
3.5
56
48.2
Minor BPS
45.2
-0.3
1.7
52.24
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009474
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009883
4110266 - 4134056
23791