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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_41193_42079_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41193 - 42079
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCGATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTACTTAATT
Flanking Amino Acid:
IMIMLFVGLMRFATVVLGLV
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
72.3
37.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.6
0.76
0.9
77.2
35.8
Minor 5ss
31.5
-2.1
3.5
47.6
47.9
Minor BPS
77.2
0.93
1.4
88.84
36.2

Associated Gene:

Gene:
SLC35E2B
Ensembl Gene ID:
ENSAPLG00000011973
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012468
37047 - 45205
8159