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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4132882_4133381_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4132882 - 4133381
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GCCTCTTGAATT
Flanking Amino Acid:
KKNLSERGMHDMRSAVEGGS
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
55
44.6
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
49.5
-0
2.5
61.3
45.5
Minor BPS
59.8
0.39
1.5
68.97
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009474
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009883
4110266 - 4134056
23791