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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4133514_4133958_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4133514 - 4133958
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCACCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAC
U12 Branch Point Sequence:
TCCTCTTCCACC
Flanking Amino Acid:
TKGEDLAGWRGHFGNSALRG
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
55.1
0.13
1.3
67.8
38.2
Major PPT
61.8
0.27
1
60.4
34.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
49.3
-0
2
61.68
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009474
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009883
4110266 - 4134056
23791