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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4171539_4172371_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4171539 - 4172371
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
GTTGGGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TGGTATTTGACA
Flanking Amino Acid:
FVNVKFQSGGESFTFQIAPD
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
57.3
42
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
67.6
0.4
1.1
58.7
46.1
Minor 5ss
30
-2.3
3.3
32.9
42.4
Minor BPS
60.3
0.32
1.5
67.84
38.5

Associated Gene:

Gene:
PIK3CD
Ensembl Gene ID:
ENSAPLG00000008183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008631
4169135 - 4189459
20325