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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4173755_4174995_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4173755 - 4174995
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
ATTCTCTTACTT
Flanking Amino Acid:
SKVNADERMKLVVQAGLFHG
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
69.2
0.48
1
61
37.1
Major PPT
79.8
0.67
0.7
77.4
24.6
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
63.4
0.5
1.6
79.24
37.1

Associated Gene:

Gene:
PIK3CD
Ensembl Gene ID:
ENSAPLG00000008183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008631
4169135 - 4189459
20325