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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4175218_4178376_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4175218 - 4178376
Intron Length:
3159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
AGCACCCTGATA
Flanking Amino Acid:
RSTKKKSKKADCPIAWVNVM
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
47.8
-0.1
1.7
54.95
37.4

Associated Gene:

Gene:
PIK3CD
Ensembl Gene ID:
ENSAPLG00000008183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008631
4169135 - 4189459
20325