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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4180308_4181015_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4180308 - 4181015
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTTGCCCTTACA
Flanking Amino Acid:
KWNKHEDVAQMISLLQTWPE
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
83.7
0.76
0.8
76.9
31.9
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
56.9
0.21
2.1
76.43
40.4

Associated Gene:

Gene:
PIK3CD
Ensembl Gene ID:
ENSAPLG00000008183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008631
4169135 - 4189459
20325