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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4181442_4182096_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4181442 - 4182096
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTGCTTTAACC
Flanking Amino Acid:
KIGHFLFWHLRSEMHVPAVA
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
81.1
0.7
0.7
73.9
31.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
80.9
0.95
1.2
85.93
32.4

Associated Gene:

Gene:
PIK3CD
Ensembl Gene ID:
ENSAPLG00000008183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008631
4169135 - 4189459
20325