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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4187991_4188602_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4187991 - 4188602
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CCTTTCTGAATA
Flanking Amino Acid:
GKTNNNEKFERFRGYCEKAY
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
68.1
0.41
0.9
65.5
34.9
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
62.5
0.39
1.4
67.18
40

Associated Gene:

Gene:
PIK3CD
Ensembl Gene ID:
ENSAPLG00000008183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008631
4169135 - 4189459
20325