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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4196449_4197172_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4196449 - 4197172
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TCTATCTTAACA
Flanking Amino Acid:
ALTITVNPMETYEDQHSSEE
Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
70.2
0.5
1
72.1
33
Major PPT
77.7
0.62
0.9
73.3
35.8
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
76.6
0.83
1.2
79.58
36.6

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290
ENSAPLT00000034270
4196254 - 4228087
31834
ENSAPLT00000031602
4196254 - 4223701
27448