About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4199871_4200470_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4199871 - 4200470
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
ATTGTTTTACTT
Flanking Amino Acid:
SSSNLGMIITGVDTMASYEE
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
55.1
0.24
1.7
72.81
39.3

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031602
4196254 - 4223701
27448
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290
ENSAPLT00000034270
4196254 - 4228087
31834