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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4201905_4202558_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4201905 - 4202558
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
IADGIGKGVKIHVNPSQSTL
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.2
0.68
0.9
77.1
35.8
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290
ENSAPLT00000034270
4196254 - 4228087
31834
ENSAPLT00000031602
4196254 - 4223701
27448